Lab Activities

Laboratory for Metabolomics


Research Activities

Makoto Arita portrait

Team Director

Makoto Arita

Lipids constitute biological membranes and play a variety of other roles as energy sources, signaling molecules, and their precursors. Since lipids are extremely diverse molecules, the precise determination of different molecular species of lipid, a process we have termed “LipoQuality”, is important for understanding their functions in physiology and disease, and for discovering novel bioactive lipids that may have therapeutic benefits. In general, dysregulated lipid metabolism is associated with diseases such as obesity, atherosclerosis, stroke, hypertension, and diabetes, and hence there is great interest in furthering our understanding of how lipids behave within complex biological systems. We aim to elucidate the mechanisms that create, regulate, and recognize lipid diversity as a spatiotemporal system by constructing a “Lipidome Atlas”, as well as to identify diseases caused by its disturbance.

Innovations in spatial lipidomics technologies include post-ionization (MALDI-2), trapped ion mobility spectrometry (TIMS), and optimization of matrix conditions and laser settings. This enables the highly sensitive detection of both positive and negative ions from the same tissue section, and further facilitates accurate structural annotation via MS/MS. This novel technology, termed ‘SMASH-imaging’ enables the visualization of 500 types of lipid molecules from the same section, capturing differences in metabolic states across spatial locations within tissue. It contributes to the construction of unbiased and highly accurate lipidome atlas.

Understanding the molecular mechanisms underlying aging is crucial for enhancing healthy longevity. We compiled a comprehensive dataset of non-targeted lipidomics across multiple tissues at various life stages in mice to explore the potential link between aging and lipid metabolism. This study also provided a valuable resource for illuminating potential links between bacterial lipid metabolism and host tissue homeostasis associated with aging.

Innovative lipidomics for creation of the Lipidome Atlas

Laboratory for Metabolomics figure

Innovative lipidomics for creation of the Lipidome Atlas

Laboratory for Metabolomics figure

We aim to elucidate the mechanisms that create, regulate and recognize lipid diversity and its localization in vivo, and to identify diseases caused by the disruption of such mechanisms. The Lipidome Atlas will facilitate the discovery of new biological systems shaped by lipid diversity, leading to an integrated understanding of lipid-centric biology.

We aim to elucidate the mechanisms that create, regulate and recognize lipid diversity and its localization in vivo, and to identify diseases caused by the disruption of such mechanisms. The Lipidome Atlas will facilitate the discovery of new biological systems shaped by lipid diversity, leading to an integrated understanding of lipid-centric biology.

Recent Major Publications

  1. Ohba Y, Fujiwara C, Arita M. Mitochondrial cardiolipin remodeling facilitates efficient myoblast differentiation. J Lipid Res 66(11), 100909 (2025)

  2. Ishihara T, Tsugawa H, Iwanami S, Chang J, Minoda A, Arita M. Transcriptomic and lipidomic analysis of aging-associated inflammatory signature in mouse liver. Inflamm Regen 45(1), 13 (2025)

  3. Ito E, Hayashizaki R, Hosaka T, Yamane T, Miyata J, Isobe Y, Arita M. Eosinophils and pleural macrophages counter regulate IL-33-elicited airway inflammation via the 12/15-lipoxygenase pathway. Front Immunol 16, 1565670 (2025)

  4. Hoshikawa Y, Shirota N, Tsugawa H, Kimura S, Matsuyama A, Yashiroda Y, Kakeya H, Arita M, Iizumi R, Yoshida M, Nishimura S. Formation of giant ER sheets by pentadecanoic acid causes lipotoxicity in fission yeast. Proc Natl Acad Sci U S A 122(22), e2422126122 (2025)

  5. Deng K, Isobe Y, Tsumagari K, Kato T, Arai H, Imami K, Arita M. 12/15-lipoxygenase-derived electrophilic lipid modifications in phagocytic macrophages. ACS Chem Biol 20(2), 357-368 (2025)

Invited Presentations

  • Arita M. Biology of LipoQuality and the Lipidome Atlas. The 10th Asian-Oceanian Symposium on Plant Lipids (ASPL2025), Matsue, Japan, November 25–28 (2025)

  • Arita M. Lipidome signatures associated with aging and host-microbiome interactions. The 8th International Symposium on Lipid Science and Health & The 5th American Oil Chemists Society China Section Joint Conference, Wuhan, China, November 7-8 (2025)

  • Arita M. Biology of Lipid Diversity and the Lipidome Atlas. The 65th International Conference on the Bioscience of Lipids (ICBL2025), Innsbruck, Austria, September 21–24 (2025)

  • Arita M. Lipidome signatures associated with aging and host-microbiome interactions. McGill-RIKEN Symposium 2025, Montreal, Canada, July 7–8 (2025)

  • Arita M. Biology of LipoQuality and the Lipidome Atlas. The 57th Annual Scientific Meeting of the Japan Atherosclerosis Society, Tsukuba, Japan, July 5-6 (2025)

  • Arita M. Biology of LipoQuality and the Lipidome Atlas. AOMSC2025, Ishigaki Island, Japan, June 22–25 (2025)

  • Arita M. Advanced lipidomics to illuminate the functional metabolic network in host-microbiome interactions: International Symposium on Functional Metabolomics and Translation to Chronic Diseases & Bilateral Meeting of China-Germany Cooperation on Diabetes Prevention, Dalian, China, April 25-27 (2025)

  • Arita M. Cutting-edge lipidomics to elucidate the host-microbiome interactions. Korea Metabolomics Society (KoMetS2025), Jeju, Korea, April 2-4 (2025)